Pathguide: the pathway resource list
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Statistical Summary of Pathguide Resources

Note that some enumerations, such as the resources under Availability, are exclusive while others, such as those under Tools, may count the same resource for every criteria it satisfies.

Unelss otherwise noted, the values represent the number or resources that contain/satisfy the specified data/criteria.

The "Contents" section also includes values denoted as "Totals". This is a simple summation and does not account for any overlaps in data between the resources.

Total Resources702
Resources with Primary Data Sources370
Resources with Secondary Data Sources320
Free to all users498
Not currently available142
Free to academic users39
License purchase required22
Data Access Methods  
Keyword searches549
Download in other format502
Browsing / Canned queries496
Download in BioPAX format55
Download in PSI format45
Download in SBML format42
SQL queries10
Download in CellML format2
Interaction or functional association prediction132
Pathway diagram tools104
Text mining43
Pathway discovery tools28
Expression analysis17
Homo sapiens251
Mus musculus147
Saccharomyces cerevisiae95
Arabidopsis thaliana86
Rattus norvegicus86
Drosophila melanogaster81
Caenorhabditis elegans72
Escherichia coli52
Oryza sativa33
Danio rerio28
Bos taurus25
Bacillus subtilis24
Schizosaccharomyces pombe23
Helicobacter pylori18
Plasmodium falciparum18
Zea mays15
Human immunodeficiency virus11
Xenopus laevis10
Hepatitis C virus7
Dictyostelium discoideum5
Chlamydomonas reinhardtii5
Mycoplasma pneumoniae3
Takifugu rubripes2
Pneumocystis carinii1
Protein-Protein Interactions320
Metabolic Pathways166
Signaling Pathways133
Transcription Factors / Gene Regulatory Networks115
Protein-Compound Interactions101
Pathway Diagrams88
Genetic Interaction Networks44
Protein Sequence Focused27
Resources containing small molecules105
Total small molecules36,551,354
Resources containing genes/proteins372
Total genes/proteins495,444,952
Resources containing interactions/reactions347
Total interactions/reactions4,430,855,881
Resources containing pathways147
Total pathways7,950,312
Resources containing experiments119
Total experiments4,381,788
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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