Pathguide: the pathway resource list
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Statistical Summary of Pathguide Resources

Note that some enumerations, such as the resources under Availability, are exclusive while others, such as those under Tools, may count the same resource for every criteria it satisfies.

Unelss otherwise noted, the values represent the number or resources that contain/satisfy the specified data/criteria.

The "Contents" section also includes values denoted as "Totals". This is a simple summation and does not account for any overlaps in data between the resources.

Total Resources697
Resources with Primary Data Sources367
Resources with Secondary Data Sources318
Free to all users494
Not currently available142
Free to academic users39
License purchase required22
Data Access Methods  
Keyword searches546
Download in other format498
Browsing / Canned queries496
Download in BioPAX format55
Download in PSI format45
Download in SBML format42
SQL queries10
Download in CellML format2
Interaction or functional association prediction129
Pathway diagram tools101
Text mining43
Pathway discovery tools26
Expression analysis17
Homo sapiens247
Mus musculus146
Saccharomyces cerevisiae95
Arabidopsis thaliana86
Rattus norvegicus86
Drosophila melanogaster81
Caenorhabditis elegans72
Escherichia coli51
Oryza sativa33
Danio rerio28
Bos taurus25
Schizosaccharomyces pombe23
Bacillus subtilis23
Helicobacter pylori18
Plasmodium falciparum18
Zea mays15
Human immunodeficiency virus11
Xenopus laevis10
Hepatitis C virus7
Dictyostelium discoideum5
Chlamydomonas reinhardtii5
Mycoplasma pneumoniae3
Takifugu rubripes2
Pneumocystis carinii1
Protein-Protein Interactions318
Metabolic Pathways166
Signaling Pathways133
Transcription Factors / Gene Regulatory Networks112
Protein-Compound Interactions101
Pathway Diagrams88
Genetic Interaction Networks44
Protein Sequence Focused27
Resources containing small molecules105
Total small molecules36,551,354
Resources containing genes/proteins369
Total genes/proteins495,422,184
Resources containing interactions/reactions343
Total interactions/reactions4,429,964,891
Resources containing pathways147
Total pathways7,950,312
Resources containing experiments119
Total experiments4,381,788
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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