Pathguide: the pathway resource list
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Statistical Summary of Pathguide Resources

Note that some enumerations, such as the resources under Availability, are exclusive while others, such as those under Tools, may count the same resource for every criteria it satisfies.

Unelss otherwise noted, the values represent the number or resources that contain/satisfy the specified data/criteria.

The "Contents" section also includes values denoted as "Totals". This is a simple summation and does not account for any overlaps in data between the resources.

General  
Total Resources688
Resources with Primary Data Sources366
Resources with Secondary Data Sources310
Availability  
Free to all users485
Not currently available142
Free to academic users39
License purchase required22
Data Access Methods  
Keyword searches539
Download in other format492
Browsing / Canned queries487
Download in BioPAX format55
Download in PSI format45
Download in SBML format40
SQL queries10
Download in CellML format2
Tools  
Interaction or functional association prediction128
Pathway diagram tools101
Text mining43
Pathway discovery tools26
Expression analysis17
Organisms  
Homo sapiens242
Mus musculus143
Saccharomyces cerevisiae94
Rattus norvegicus85
Arabidopsis thaliana84
Drosophila melanogaster80
Caenorhabditis elegans71
Escherichia coli51
Oryza sativa33
Danio rerio28
Bos taurus25
Schizosaccharomyces pombe23
Bacillus subtilis23
Helicobacter pylori18
Plasmodium falciparum18
Zea mays15
Xenopus laevis10
Human immunodeficiency virus10
Hepatitis C virus7
Dictyostelium discoideum5
Chlamydomonas reinhardtii5
Mycoplasma pneumoniae3
Takifugu rubripes2
Pneumocystis carinii1
Categories  
Protein-Protein Interactions314
Metabolic Pathways161
Signaling Pathways130
Transcription Factors / Gene Regulatory Networks112
Protein-Compound Interactions100
Pathway Diagrams87
Genetic Interaction Networks42
Protein Sequence Focused27
Other36
Contents  
Resources containing small molecules105
Total small molecules36,551,354
Resources containing genes/proteins365
Total genes/proteins495,267,076
Resources containing interactions/reactions338
Total interactions/reactions4,429,287,815
Resources containing pathways143
Total pathways7,947,834
Resources containing experiments118
Total experiments4,351,432
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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