Pathguide: the pathway resource list
Home BioPAX cBio MSKCC
 
Statistical Summary of Pathguide Resources

Note that some enumerations, such as the resources under Availability, are exclusive while others, such as those under Tools, may count the same resource for every criteria it satisfies.

Unelss otherwise noted, the values represent the number or resources that contain/satisfy the specified data/criteria.

The "Contents" section also includes values denoted as "Totals". This is a simple summation and does not account for any overlaps in data between the resources.

General  
Total Resources662
Resources with Primary Data Sources343
Resources with Secondary Data Sources307
Availability  
Free to all users520
Not currently available73
Free to academic users42
License purchase required27
Data Access Methods  
Keyword searches518
Browsing / Canned queries471
Download in other format469
Download in BioPAX format47
Download in PSI format42
Download in SBML format36
SQL queries9
Download in CellML format2
Tools  
Interaction or functional association prediction119
Pathway diagram tools91
Text mining38
Pathway discovery tools25
Expression analysis16
Organisms  
Homo sapiens233
Mus musculus142
Saccharomyces cerevisiae93
Rattus norvegicus85
Arabidopsis thaliana82
Drosophila melanogaster80
Caenorhabditis elegans71
Escherichia coli50
Oryza sativa33
Danio rerio27
Bos taurus25
Schizosaccharomyces pombe23
Bacillus subtilis22
Helicobacter pylori18
Plasmodium falciparum18
Zea mays14
Xenopus laevis10
Human immunodeficiency virus9
Hepatitis C virus7
Dictyostelium discoideum5
Chlamydomonas reinhardtii5
Mycoplasma pneumoniae3
Takifugu rubripes2
Pneumocystis carinii1
Categories  
Protein-Protein Interactions301
Metabolic Pathways155
Signaling Pathways120
Transcription Factors / Gene Regulatory Networks103
Protein-Compound Interactions97
Pathway Diagrams77
Genetic Interaction Networks42
Protein Sequence Focused27
Other36
Contents  
Resources containing small molecules100
Total small molecules35,921,995
Resources containing genes/proteins349
Total genes/proteins4,771,444,628
Resources containing interactions/reactions321
Total interactions/reactions3,914,873,736
Resources containing pathways129
Total pathways7,003,855
Resources containing experiments117
Total experiments4,388,591
Back to the List



"Pathguide: the pathway resource list" is maintained by Gary Bader1,2 and Sylva Donaldson2.
The website was originally created by Michael Cary 1 and was significantly updated and redesigned by Vuk Pavlovic2.
Thanks to Emek Demir for the Pathguide name.

1. Sander Group at Memorial Sloan-Kettering Cancer Center
2. Bader Lab

website tracker