Pathguide: the pathway resource list
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Full Record: PC  
Short NamePC
Full NamePathway Commons
Last ObservedFebruary 9th, 2017
DescriptionPathway Commons is a collection of publicly available pathways from multiple organisms. It provides researchers with convenient access to a comprehensive collection of pathways from multiple sources represented in a common language. Access is via a web portal for browsing, query and download.

Biologists: Browse and search pathways across multiple valuable public pathway databases.

Computational biologists: Download an integrated set of pathways in BioPAX format for global analysis.

Software developers: Build software on top of Pathway Commons using our web service API. Download and install the cPath software to create a local mirror.

Sample Data URL 
Data SourceSecondary
AvailabilityFree to all users
PubMed ArticlesPathway Commons, a web resource for biological pathway data.
Cerami EG, Gross BE, Demir E, Rodchenkov I, Babur O, Anwar N, Schultz N, Bader GD, Sander C
Nucleic Acids Res. 2011 Jan;39(Database issue):D685-90.

Types of DataProtein-Protein Interactions, Metabolic Pathways, Signaling Pathways, Protein-Compound Interactions
Types of Tools
Genes / Proteins: 1,744,764
Interactions / Reactions: 1,931,035
Pathways: 5,900
Last Content Update: August 16th, 2017
Major OrganismsArabidopsis thaliana, Escherichia coli, Bos taurus, Hepatitis C virus, Rattus norvegicus, Caenorhabditis elegans, Homo sapiens, Saccharomyces cerevisiae, Chlamydomonas reinhardtii, Mus musculus, Schizosaccharomyces pombe, Dictyostelium discoideum, Oryza sativa, Xenopus laevis, Drosophila melanogaster, Plasmodium falciparum, Zea mays, Helicobacter pylori, Bacillus subtilis, Human immunodeficiency virus
Relative Popularity144
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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