| CPDB | | ConsensusPathDB | | http://cpdb.molgen.mpg.de/CPDB | | February 8th, 2017 | ConsensusPathDB is a database that integrates pathway and other functional interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database and others, and is currently focused on human interaction data. ConsensusPathDB contains biochemical reactions, protein, genetic, metabolic, signaling, drug-target interactions and gene regulatory interactions involving different types of physical entities like genes, RNA, proteins, complexes, metabolites etc.
You can upload your interaction network in BioPAX, PSI-MI or SBML file format and it will be mapped to information in ConsensusPathDB. | | | | Secondary | | Free to academic users | ConsensusPathDB--a database for integrating human functional interaction networks.
Kamburov A, Wierling C, Lehrach H, Herwig R.
Nucleic Acids Res. 2008 Oct 21.
Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
Pentchev K, Ono K, Herwig R, Ideker T, Kamburov A.
Bioinformatics. 2010 Nov 1;26(21):2796-7.
ConsensusPathDB: toward a more complete picture of cell biology
Kamburov A, Pentchev K, Galicka H, Wierling C, Lehrach H, Herwig R
Nucleic Acids Res. 2010 Nov 11
The ConsensusPathDB interaction database: 2013 update.
Kamburov A, Stelzl U, Lehrach H, Herwig R
Nucleic Acids Res. 2013 Jan;41(Database issue):D793-800.
Analyzing and interpreting genome data at the network level with ConsensusPathDB.
Herwig R, Hardt C, Lienhard M, Kamburov A.
Nat Protoc. 2016 Oct;11(10):1889-907.
| | Protein-Protein Interactions, Metabolic Pathways, Signaling Pathways, Transcription Factors / Gene Regulatory Networks, Protein-Compound Interactions | | Pathway diagram tools, Interaction or functional association prediction | | Genes / Proteins: | 212,732 | | Interactions / Reactions: | 840,792 | | Pathways: | 8,342 | | Last Content Update: | January 11th, 2017 |
| | Homo sapiens, Saccharomyces cerevisiae, Mus musculus | | 125 |  |
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