Pathguide: the pathway resource list
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Full Record: CPDB  
Short NameCPDB
Full NameConsensusPathDB
Last ObservedFebruary 8th, 2017
DescriptionConsensusPathDB is a database that integrates pathway and other functional interaction resources like Reactome, HumanCyc, IntAct, Pathway Interaction Database and others, and is currently focused on human interaction data. ConsensusPathDB contains biochemical reactions, protein, genetic, metabolic, signaling, drug-target interactions and gene regulatory interactions involving different types of physical entities like genes, RNA, proteins, complexes, metabolites etc.
You can upload your interaction network in BioPAX, PSI-MI or SBML file format and it will be mapped to information in ConsensusPathDB.
Sample Data URL 
Data SourceSecondary
AvailabilityFree to academic users
PubMed ArticlesConsensusPathDB--a database for integrating human functional interaction networks.
Kamburov A, Wierling C, Lehrach H, Herwig R.
Nucleic Acids Res. 2008 Oct 21.

Evidence mining and novelty assessment of protein-protein interactions with the ConsensusPathDB plugin for Cytoscape.
Pentchev K, Ono K, Herwig R, Ideker T, Kamburov A.
Bioinformatics. 2010 Nov 1;26(21):2796-7.

ConsensusPathDB: toward a more complete picture of cell biology
Kamburov A, Pentchev K, Galicka H, Wierling C, Lehrach H, Herwig R
Nucleic Acids Res. 2010 Nov 11

The ConsensusPathDB interaction database: 2013 update.
Kamburov A, Stelzl U, Lehrach H, Herwig R
Nucleic Acids Res. 2013 Jan;41(Database issue):D793-800.

Analyzing and interpreting genome data at the network level with ConsensusPathDB.
Herwig R, Hardt C, Lienhard M, Kamburov A.
Nat Protoc. 2016 Oct;11(10):1889-907.

Types of DataProtein-Protein Interactions, Metabolic Pathways, Signaling Pathways, Transcription Factors / Gene Regulatory Networks, Protein-Compound Interactions
Types of ToolsPathway diagram tools, Interaction or functional association prediction
Genes / Proteins: 212,732
Interactions / Reactions: 840,792
Pathways: 8,342
Last Content Update: January 11th, 2017
Major OrganismsHomo sapiens, Saccharomyces cerevisiae, Mus musculus
Relative Popularity125
Homepage Uptime StatisticsWebsite tracker - uptime monitoring service
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"Pathguide: the pathway resource list" is maintained by Gary Bader1.
The website was originally created by Michael Cary 2 and was significantly updated and redesigned by Vuk Pavlovic1.
Thanks to Emek Demir for the Pathguide name.

1. Bader Lab
2. Sander Group

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